Zerene Stacker

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stacker:support:knownissues [2017/02/13 21:20]
rjlittlefield [index] orphaned projects moved to FAQs
stacker:support:knownissues [2023/09/08 15:11]
rjlittlefield [Macintosh macOS Monterey, application silently fails to launch]
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 ~~NOTOC~~ ~~NOTOC~~
-====== Zerene Stacker Known Issues ​======+===== Zerene Stacker Known Issues =====
  
-Known Issues is a list of unusual problems that have been reported typically one to three times, but may be seen by other people ​too+Known Issues is a list of unusual problems that can be quite challenging ​to diagnose and solve from scratch. ​ We keep this list mainly for our own use in providing support, but we're making it publicly available in case it may be useful to other people ​also.
  
 If you encounter difficulties that are not on this list, or if the suggested workarounds do not work for you, then please contact **[[support@zerenesystems.com]]**. ​ We try hard to fix problems, but we have to know about them first! If you encounter difficulties that are not on this list, or if the suggested workarounds do not work for you, then please contact **[[support@zerenesystems.com]]**. ​ We try hard to fix problems, but we have to know about them first!
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 Here is an index to the known issues: Here is an index to the known issues:
  
-    * [[#using_capture_one_raw_converter_must_turn_off_option_to_embed_camera_profile|Using Capture One raw convertermust turn off option to "Embed Camera Profile".]]+    * [[#macos_big_sur_system_preference_for_prefer_tabs_can_hang_zerene_stacker|macOS Big SurSystem Preference for "Prefer tabs" ​can hang Zerene Stacker.]]
     * [[#​license_keys_that_contain_accented_or_non-english_characters_may_get_corrupted_in_email_transmission|License keys that contain accented or non-English characters may get corrupted in email transmission.]]     * [[#​license_keys_that_contain_accented_or_non-english_characters_may_get_corrupted_in_email_transmission|License keys that contain accented or non-English characters may get corrupted in email transmission.]]
-    * [[#settings_are_retained_across_uninstall_reinstall|Settings are retained across uninstall / reinstall.]]+    * [[#settings_are_retained_across_uninstallreinstall|Settings are retained across uninstall/​reinstall.]]
     * [[#​license_key_must_be_installed_for_each_user_account|License key must be installed for each user account.]]     * [[#​license_key_must_be_installed_for_each_user_account|License key must be installed for each user account.]]
-    * [[#​bit_tiff_files_should_be_uncompressed|16-bit TIFF files should be uncompressed]] +    * [[#​bit_tiff_files_should_be_uncompressed|16-bit TIFF files should be uncompressed.]]
-    * [[#​external_tiff_reader_cannot_handle_commas_in_file_or_directory_names|External TIFF reader cannot handle commas in file or directory names.]]+
     * [[#​certain_grayscale_images_may_cause_incompatible_colormodel|Certain grayscale images may cause "​incompatible ColorModel"​.]]     * [[#​certain_grayscale_images_may_cause_incompatible_colormodel|Certain grayscale images may cause "​incompatible ColorModel"​.]]
     * [[#​zonealarm_toolbar_may_significantly_reduce_available_memory|ZoneAlarm Toolbar may significantly reduce available memory.]]     * [[#​zonealarm_toolbar_may_significantly_reduce_available_memory|ZoneAlarm Toolbar may significantly reduce available memory.]]
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     * [[#​to_process_large_images_at_full_resolution_you_must_increase_the_memory_allocation_above_the_default_values|To process large images at full resolution, you must increase the memory allocation above the default values.]]     * [[#​to_process_large_images_at_full_resolution_you_must_increase_the_memory_allocation_above_the_default_values|To process large images at full resolution, you must increase the memory allocation above the default values.]]
     * [[#​continuous_backup_or_indexing_may_interfere_with_image_caching|Continuous backup or indexing may interfere with image caching.]]     * [[#​continuous_backup_or_indexing_may_interfere_with_image_caching|Continuous backup or indexing may interfere with image caching.]]
-    * [[#​must_use_double-click_not_the_open_button_to_navigate_into_a_folder_when_using_file_open_project|Must use double-click,​ not the Open button, to navigate into a folder when using File > Open Project]]+    * [[#​must_use_double-click_not_the_open_button_to_navigate_into_a_folder_when_using_file_open_project|Must use double-click,​ not the Open button, to navigate into a folder when using File > Open Project ​.]]
     * [[#​windows_my_documents_and_my_pictures_may_not_be_writable|Windows,​ "My Documents"​ and "My Pictures"​ may not be writable.]]     * [[#​windows_my_documents_and_my_pictures_may_not_be_writable|Windows,​ "My Documents"​ and "My Pictures"​ may not be writable.]]
     * [[#​windows_cannot_navigate_through_a_shortcut|Windows,​ cannot navigate through a shortcut.]]     * [[#​windows_cannot_navigate_through_a_shortcut|Windows,​ cannot navigate through a shortcut.]]
-    * [[#​windows_manually_edited_program_files_persist_across_re-installation|Windows,​ manually edited program files persist across re-installation]] +    * [[#​windows_manually_edited_program_files_persist_across_re-installation|Windows,​ manually edited program files persist across re-installation.]] 
-    * [[#​macintosh_os_x_could_not_establish_communications_with_stackshot_controller|Macintosh OS X, "Could not establish communications with StackShot controller"​]] +    * [[#​macintosh_macos_monterey_application_silently_fails_to_launch|Macintosh macOS Monterey, application silently fails to launch.]] 
-    * [[#​macintosh_os_x_mountain_lion_reports_installation_bundle_is_damaged_move_to_trash|Macintosh OS X (Mountain Lion) reports installation bundle is "​damaged,​ move to trash"​]]+    * [[#​macintosh_os_x_could_not_establish_communications_with_stackshot_controller|Macintosh OS X, "Could not establish communications with StackShot controller"​.]] 
 +    * [[#​macintosh_os_x_zerene_stacker_will_work_on_only_one_stack_at_a_time|Macintosh OS X, Zerene Stacker will work on only one stack at a time.]] 
 +    * [[#​macintosh_os_x_mountain_lion_reports_installation_bundle_is_damaged_move_to_trash|Macintosh OS X (Mountain Lion) reports installation bundle is "​damaged,​ move to trash".]]
     * [[#​macintosh_os_x_how_to_recover_from_excessive_memory_allocation|Macintosh OS X, how to recover from excessive memory allocation.]]     * [[#​macintosh_os_x_how_to_recover_from_excessive_memory_allocation|Macintosh OS X, how to recover from excessive memory allocation.]]
-    * [[#​macintosh_os_x_the_downloaded_bundle_runs_once_but_not_again|Macintosh OS X, the downloaded bundle runs once but not again.]] 
     * [[#​macintosh_os_x_tiff_files_may_be_very_slow_to_read|Macintosh OS X, TIFF files may be very slow to read.]]     * [[#​macintosh_os_x_tiff_files_may_be_very_slow_to_read|Macintosh OS X, TIFF files may be very slow to read.]]
     * [[#​macintosh_os_x_accessing_external_drives_may_be_awkward|Macintosh OS X, accessing external drives may be awkward.]]     * [[#​macintosh_os_x_accessing_external_drives_may_be_awkward|Macintosh OS X, accessing external drives may be awkward.]]
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     * [[#​macintosh_os_x_jpeg_files_with_color_profile_nikon_srgb_4003001_will_be_dark_and_muddy|Macintosh OS X, JPEG files with color profile "Nikon sRGB 4.0.0.3001"​ will be dark and muddy.]]     * [[#​macintosh_os_x_jpeg_files_with_color_profile_nikon_srgb_4003001_will_be_dark_and_muddy|Macintosh OS X, JPEG files with color profile "Nikon sRGB 4.0.0.3001"​ will be dark and muddy.]]
     * [[#​linux_use_of_native_look_feel_with_ubuntu_studio_theme_fails|Linux,​ use of native Look & Feel with Ubuntu Studio theme fails.]]     * [[#​linux_use_of_native_look_feel_with_ubuntu_studio_theme_fails|Linux,​ use of native Look & Feel with Ubuntu Studio theme fails.]]
 +
 +Solved issues, retained here for historical reasons.
     * [[#​very_large_tiff_files_may_require_use_external_tiff_reader|Very large TIFF files may require "Use External TIFF Reader"​.]]     * [[#​very_large_tiff_files_may_require_use_external_tiff_reader|Very large TIFF files may require "Use External TIFF Reader"​.]]
     * [[#​red_rasterformatexception_occurs_during_retouching|Red "​RasterFormatException"​ occurs during retouching.]]     * [[#​red_rasterformatexception_occurs_during_retouching|Red "​RasterFormatException"​ occurs during retouching.]]
     * [[#​graphics_acceleration_sometimes_makes_the_retouching_brush_very_slow_and_jerky|Graphics "​acceleration"​ sometimes makes the retouching brush very slow and jerky.]]     * [[#​graphics_acceleration_sometimes_makes_the_retouching_brush_very_slow_and_jerky|Graphics "​acceleration"​ sometimes makes the retouching brush very slow and jerky.]]
-    * [[#​retouching_brush_disappears|Retouching brush disappears]]+    * [[#​retouching_brush_disappears|Retouching brush disappears.]] 
 +    * [[#​external_tiff_reader_cannot_handle_commas_in_file_or_directory_names|External TIFF reader cannot handle commas in file or directory names.]] 
 +    * [[#​macintosh_os_x_the_downloaded_bundle_runs_once_but_not_again|Macintosh OS X, the downloaded bundle runs once but not again.]] 
 +    * [[#​using_capture_one_raw_converter_must_turn_off_option_to_embed_camera_profile|Using Capture One raw converter, must turn off option to "Embed Camera Profile"​.]]
  
-===== Using Capture One raw convertermust turn off option to "Embed Camera Profile" =====+===== macOS Big Sursystem preference for "Prefer tabs" ​can hang Zerene Stacker ​=====
  
-When using the Capture One™ raw converter from Phase One, sometimes a red "Uh-oh" ​popup error will occurwith a detailed diagnostic ​that says this:+Beginning with macOS "Big Sur" ​(macOS 11also known as 10.16) **it is critical ​that System Preferences > General > "​Prefer tabs... when opening documents"​ must be set to either "​never"​ or "in full screen"​**. ​ Further, if you select "in full screen",​ then do not run Zerene in full screen mode.  ​
  
-        java.awt.color.CMMException:​ LCMS error 13: couldn'​t link the profiles+These restrictions are because there is a new bug, introduced in macOS Big Sur, that causes Zerene Stacker (and all other Java programs) to display a grossly oversized window and become nonresponsive,​ whenever the application tries to open a non-blocking dialog In Zerene Stacker, such dialogs include the DMap contrast threshold slider, the StackShot controller panel, and the DOF and stereo calculators  
 + 
 +The safest setting for "​Prefer tabs" is "​never"​ The most dangerous setting is "​always",​ which as of this writing (Feb 2021) will cause Zerene Stacker to hang if it tries to open any of the dialogs listed earlier. 
 + 
 +When Zerene Stacker is hung because of this problem, you may not be able to get a Force Quit menu by mouse action. ​ However, the keyboard combination Cmd-Option-Escape will still work to bring up a Force Quit menu, in which you can select Zerene Stacker and then Force Quit it.
  
-To solve this problem, go into Capture One and change its settings so as to select a color profile other than "Embed Camera Profile",​ before generating TIFF or JPEG files to be loaded into Zerene Stacker. ​ The "Embed Camera Profile"​ option apparently causes Capture One to produce an output file that contains multiple color profiles, linked together in some way that cannot be handled by the image I/O libraries used inside Zerene Stacker. ​ With "Embed Camera Profile"​ not selected, Capture One will include only the image'​s own color profile, which is fully supported by Zerene Stacker. 
  
-This problem is also solved in the current beta release of Zerene Stacker. 
 ===== License keys that contain accented or non-English characters may get corrupted in email transmission ===== ===== License keys that contain accented or non-English characters may get corrupted in email transmission =====
-  
  
 If the username in the license key looks odd, and the Enter button stays gray when you paste in your license key, try just retyping the name to match what you entered when you purchased the license. ​ Further details are provided in **[[:​stacker:​docs:​howtoinstallalicensekey|How To Install a License Key]]**. If the username in the license key looks odd, and the Enter button stays gray when you paste in your license key, try just retyping the name to match what you entered when you purchased the license. ​ Further details are provided in **[[:​stacker:​docs:​howtoinstallalicensekey|How To Install a License Key]]**.
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 If that doesn'​t work, then please contact support@zerenesystems.com and we'll get the problem taken care of. If that doesn'​t work, then please contact support@zerenesystems.com and we'll get the problem taken care of.
  
-===== Settings are retained across uninstall / reinstall =====+===== Settings are retained across uninstall/​reinstall =====
  
 On **Windows**,​ the uninstaller program removes only folders and files that it created. ​ This causes some state information to be retained, so that uninstall/​reinstall will not restore the program to a factory-fresh condition. ​ To get back to a factory-fresh condition, you must uninstall, then manually remove one folder and the files it contains, before reinstalling.  ​ On **Windows**,​ the uninstaller program removes only folders and files that it created. ​ This causes some state information to be retained, so that uninstall/​reinstall will not restore the program to a factory-fresh condition. ​ To get back to a factory-fresh condition, you must uninstall, then manually remove one folder and the files it contains, before reinstalling.  ​
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 {{:​stacker:​support:​knownissues:​zerenestackerfolder.png}} {{:​stacker:​support:​knownissues:​zerenestackerfolder.png}}
  
-On **Macintosh OS X**, dragging the application bundle to the trash leaves behind some state information in other files and folders, so that reinstalling the program will not restore the program to a factory-fresh condition. ​ To get back to a factory-fresh condition, you must manually remove one folder and the files it contains, before reinstalling. ​ The folder you need to remove is ~/​Library/​Preferences/​ZereneStacker,​ where ~ denotes your account'​s home directory. ​ Note that the ~/Library folder is normally hidden. ​ To open it, hold down your keyboard'​s Option (Alt) key while selecting Go > Library in a Finder window. ​ Be careful that you do not remove other folders in ~/​Library/​Preferences, ​as these contain settings for other programs.  ​+On Windows 10, usually it is not possible to open the Start > Run dialog. ​ Instead, you can open a File Explorer window, then in that window'​s address bar, type in %APPDATA% and hit the Enter key. On some systems, it is also necessary to set the folder view options to "Show hidden files, folders, and drives"​. ​ See for example [[http://​www.windows10themes.net/​guides/​how-to-view-the-appdata-folder-in-windows-10/​]] 
 + 
 +On **Macintosh OS X**, dragging the application bundle to the trash leaves behind some state information in other files and folders, so that reinstalling the program will not restore the program to a factory-fresh condition. ​ To get back to a factory-fresh condition, you must manually remove one folder and the files it contains, before reinstalling. ​ The folder you need to remove is ~/​Library/​Preferences/​ZereneStacker,​ where ~ denotes your account'​s home directory. ​ Note that the ~/Library folder is normally hidden. ​ To open it, hold down your keyboard'​s Option (Alt) key while selecting Go > Library in a Finder window.  Once you have the ~/Library folder, then find and go into the Preferences folder. ​ From there, the ZereneStacker folder will be at the bottom of the list, or very close to it.  Be careful that you do not remove other folders ​or files in ~/​Library/​Preferences, ​because ​these contain settings for other programs.  ​
  
 Note that removing ~/​Library/​Preferences/​ZereneStacker will also uninstall your license key, so be sure you have a copy of that saved first. ​ If you do not already have a separate copy of your license key, you can make one by running Zerene Stacker and extracting the key using copy/paste at Options > Registration. Note that removing ~/​Library/​Preferences/​ZereneStacker will also uninstall your license key, so be sure you have a copy of that saved first. ​ If you do not already have a separate copy of your license key, you can make one by running Zerene Stacker and extracting the key using copy/paste at Options > Registration.
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             at com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor.decodeRaw(Unknown Source)             at com.sun.media.imageioimpl.plugins.tiff.TIFFDeflateDecompressor.decodeRaw(Unknown Source)
  
-On Windows and Mac, this problem can be worked around by selecting Options > Preferences > Preprocessing > Use External TIFF Reader. ​ (If you do not explicitly select this option, then the current version of Zerene Stacker should automatically fall back to using this approach anyway.)+This problem can be worked around by selecting Options > Preferences > Preprocessing > Use External TIFF Reader. ​ (If you do not explicitly select this option, then the current version of Zerene Stacker should automatically fall back to using this approach anyway.)
  
 However, it is usually more efficient to set the file format in Photoshop or Lightroom to "​None"​ or "​LZW"​ so that the file can be read directly, then in Zerene Stacker de-select the option to Use External TIFF Reader. However, it is usually more efficient to set the file format in Photoshop or Lightroom to "​None"​ or "​LZW"​ so that the file can be read directly, then in Zerene Stacker de-select the option to Use External TIFF Reader.
  
-===== External TIFF reader cannot handle commas in file or directory names ===== 
- 
-(This problem is believed to be fixed. ​ Please let us know if it reappears.) 
- 
-The external TIFF reader erroneously truncates the file name or path at the first comma. ​ This error results in a generic "Uh-oh -- something went wrong" popup, with diagnostic details in the console log that go something like this: 
- 
-            Trying to read /​Users/​zstest/​ImageFiles/​stuff,​ etc./​TIFF/​IMG_2575.tif 
-            ... 
-            From external converter error stream: TIFFOpen: /​Users/​zstest/​ImageFiles/​stuff:​ Cannot open. 
-            com.zerenesystems.stacker.a.o:​ Tried but failed to read /​Users/​zstest/​ImageFiles/​stuff,​ etc./​TIFF/​IMG_2575.tif using external converter. 
- 
-Notice the truncation of "​ImageFiles/​stuff,​ etc./​TIFF/​IMG_2575.tif"​ to be just "​ImageFiles/​stuff"​ in the error message. 
- 
-There are two different ways to avoid this problem: 
- 
-1. Rename the files or folders to remove the commas, or 
- 
-2. Go to Options > Preferences > Preprocessing and remove the checkmark on "Use External TIFF Reader"​. ​ This will cause Zerene Stacker to use its internal TIFF reader, which is a completely different piece of software that handles commas correctly. 
 ===== Certain grayscale images may cause "​incompatible ColorModel"​ ===== ===== Certain grayscale images may cause "​incompatible ColorModel"​ =====
  
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 {{:​stacker:​support:​knownissues:​outofmemorypopupdiagnostic.png}} {{:​stacker:​support:​knownissues:​outofmemorypopupdiagnostic.png}}
  
-The cure for this problem is to allocate more memory using Options > Preferences > Memory Usage. ​ Pressing the Set Automatically button works for most people, but if your images are very large then you may need to manually enter a larger value. ​ The recommended allocation is 100 megabytes per 1 megapixel, so for example 3600 megabytes for 36 megapixel images coming from a Nikon D800.+The cure for this problem is to allocate more memory using Options > Preferences > Memory Usage. ​ Pressing the Set Automatically button works for most people, but if your images are very large then you may need to manually enter a larger value. ​ The recommended allocation is 100 to 200 megabytes per 1 megapixel, so for example 3600 to 7200 megabytes for 36 megapixel images coming from a Nikon D800.
  
 Images larger than 21 megapixels will probably require using the 64-bit version of Zerene Stacker, on a 64-bit operating system. Images larger than 21 megapixels will probably require using the 64-bit version of Zerene Stacker, on a 64-bit operating system.
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 ===== Must use double-click,​ not the Open button, to navigate into a folder when using File > Open Project =====  ===== Must use double-click,​ not the Open button, to navigate into a folder when using File > Open Project ===== 
  
-When you have done File > Open Project and you want to look inside a folder to find your project, it does not work to select the folder and click the Open button. ​ Instead of doing what you want, clicking the Open button will attempt to open the folder as if it were a project. ​ This produces a cryptic and misleading error message: "​Cannot open project because .zsj project description file is missing"​. ​ To get the desired result of opening the folder to look inside it, you must double-click the folder name instead of clicking the Open button.+When the look-and-feel option to use JFileChooser is selected, and you have done File > Open Project and you want to look inside a folder to find your project, it does not work to select the folder and click the Open button. ​ Instead of doing what you want, clicking the Open button will attempt to open the folder as if it were a project. ​ This produces a cryptic and misleading error message: "​Cannot open project because .zsj project description file is missing"​. ​ To get the desired result of opening the folder to look inside it, you must double-click the folder name instead of clicking the Open button.
  
 Alternatively,​ you may prefer to use your operating system'​s file browser to locate and select the project, then drag-and-drop it onto the Input Files panel of Zerene Stacker. ​ This is equivalent to File > Open Project. ​ When doing this, you can select either the .zsj project description file or the folder that encloses it.  Again, these are equivalent when opening a project. Alternatively,​ you may prefer to use your operating system'​s file browser to locate and select the project, then drag-and-drop it onto the Input Files panel of Zerene Stacker. ​ This is equivalent to File > Open Project. ​ When doing this, you can select either the .zsj project description file or the folder that encloses it.  Again, these are equivalent when opening a project.
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             java.io.FileNotFoundException: ​ C:​\Users\Me\Pictures\unnamedZSproj20111103154858382\previewimages\-Unaligned-117.jpg (Access is denied)             java.io.FileNotFoundException: ​ C:​\Users\Me\Pictures\unnamedZSproj20111103154858382\previewimages\-Unaligned-117.jpg (Access is denied)
             at java.io.RandomAccessFile.open(Native Method)             at java.io.RandomAccessFile.open(Native Method)
-            ​+
 There are several possible workarounds for the problem: There are several possible workarounds for the problem:
   - Turn off or pause the backup or indexing facility while ZS is running.   - Turn off or pause the backup or indexing facility while ZS is running.
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   - Run your stack.   - Run your stack.
   - Back in the Services panel, click on "Start the service"​.   - Back in the Services panel, click on "Start the service"​.
 +
 +A similar problem can be caused during file saving, when Zerene Stacker attempts to copy Exif metadata from a source image file into the just-saved output image file.
  
 ===== Windows, "My Documents"​ and "My Pictures"​ may not be writable ===== ===== Windows, "My Documents"​ and "My Pictures"​ may not be writable =====
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 On Windows, if any files in C:\Program Files or C:\Program Files (x86) are manually edited, then those edits will persist across reinstallation of Zerene Stacker, even if Zerene Stacker is completely uninstalled first. ​ This is caused by an annoying feature of Windows called the "​virtual store"​. ​ Contrary to appearances,​ the original file was not actually edited, but instead it became shadowed by a second file containing the edited version. ​ When the software is uninstalled,​ the second file remains. ​ Then when the software is re-installed,​ the second file again shadows the newly re-installed version, so the edited version mysteriously reappears. ​ There seems to be no way to get rid of the second file except by logging in as Administrator,​ navigating to the virtual store, and explicitly removing the file there. ​ The virtual store is located at C:​\Users\<​username>​\Appdata\Local\VirtualStore\Program Files\ZereneStacker .  You must be logged in as Administrator to even see this directory. On Windows, if any files in C:\Program Files or C:\Program Files (x86) are manually edited, then those edits will persist across reinstallation of Zerene Stacker, even if Zerene Stacker is completely uninstalled first. ​ This is caused by an annoying feature of Windows called the "​virtual store"​. ​ Contrary to appearances,​ the original file was not actually edited, but instead it became shadowed by a second file containing the edited version. ​ When the software is uninstalled,​ the second file remains. ​ Then when the software is re-installed,​ the second file again shadows the newly re-installed version, so the edited version mysteriously reappears. ​ There seems to be no way to get rid of the second file except by logging in as Administrator,​ navigating to the virtual store, and explicitly removing the file there. ​ The virtual store is located at C:​\Users\<​username>​\Appdata\Local\VirtualStore\Program Files\ZereneStacker .  You must be logged in as Administrator to even see this directory.
 +
 +===== Macintosh macOS Monterey, application silently fails to launch =====
 +
 +Older builds of Zerene Stacker may silently fail to launch under macOS Monterey. ​ The underlying cause is a small change in macOS, which was accommodated in Zerene Stacker at Build T2021-07-31-1138 (July 31, 2021). ​ This launch problem will be fixed by updating your copy of Zerene Stacker to the latest build.
 +
 +In gory detail, here are instructions to update Zerene Stacker:
 +  - Move to Trash all copies of ZereneStacker that you have now.
 +  - Remove any ZereneStacker icons, for example on the taskbar or dock.
 +  - Using Safari, download a fresh copy of the distribution .zip from https://​zerenesystems.com/​cms/​stacker/​softwaredownloads .
 +  - Use Finder to open the Downloads folder. ​ //(Do not use the "Open downloads"​ icon inside Safari.)//
 +  - Probably the .zip download has already been unpacked to form the "​yellow smiling dog face" icon named ZereneStacker. ​
 +  - But if it has not, then unpack the .zip file manually. ​ //Be sure to do this unpack inside the Downloads folder.//
 +  - Using Finder, move the "​yellow smiling dog face" ZereneStacker icon from Downloads to Applications.
 +  - If you are using the Lightroom plugin, then you must also update that as follows:
 +    *   Be sure that Lightroom is not running.
 +    *   ​Launch Zerene Stacker from its icon in Applications. ​ This will update the Lightroom plugin to match the new version of Zerene Stacker.
 +    *   Quit ZereneStacker.
 +    *   ​Launch Lightroom and confirm that you can Export to Zerene Stacker.
  
 ===== Macintosh OS X, "Could not establish communications with StackShot controller"​ ===== ===== Macintosh OS X, "Could not establish communications with StackShot controller"​ =====
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 Interestingly,​ in most cases just going through the above steps to collect the required information also makes the problem disappear. ​ That probably has to do with the reboot and order of operations. Interestingly,​ in most cases just going through the above steps to collect the required information also makes the problem disappear. ​ That probably has to do with the reboot and order of operations.
 +
 +===== Macintosh OS X, Zerene Stacker will work on only one stack at a time =====
 +
 +Solution: open a Terminal window and launch additional copies of Zerene Stacker using the command ​
 +<​code>​
 +open -n /​Applications/​ZereneStacker.app ​
 +</​code>​
 +
 +If you put the ZereneStacker icon (the ZereneStacker.app application bundle) someplace besides in /​Applications,​ then just edit the command line accordingly.
 +
 +The explanation here is that by design, Zerene Stacker is programmed using the "​single document"​ model. ​ This means that each instance of Zerene Stacker can only work with one stack at a time.  The normal process of launching Zerene Stacker by clicking its icon will not launch a second instance. ​ Instead, clicking the icon just makes the current instance foreground, apparently in the expectation that all programs are multi-document. ​ Unfortunately there seems to be no way to just tell MacOS that Zerene Stacker is single document and it should launch another instance when the launch icon is clicked. ​ The "​-n"​ argument on the open command says to create a new instance regardless of whether there'​s already one running. ​
 +
 ===== Macintosh OS X (Mountain Lion) reports installation bundle is "​damaged,​ move to trash" ===== ===== Macintosh OS X (Mountain Lion) reports installation bundle is "​damaged,​ move to trash" =====
  
Line 283: Line 305:
 In very rare cases, the re-launch may fail because the computer cannot allocate the amount of memory that the Set Automatically button requests. ​ If this occurs, then repeat the previous procedure, but instead of clicking Set Automatically,​ simply type the value 1000 into the field labeled "​Megabytes of memory currently allocated to 32-bit Zerene Stacker"​. ​ Click OK, exit, and re-launch. In very rare cases, the re-launch may fail because the computer cannot allocate the amount of memory that the Set Automatically button requests. ​ If this occurs, then repeat the previous procedure, but instead of clicking Set Automatically,​ simply type the value 1000 into the field labeled "​Megabytes of memory currently allocated to 32-bit Zerene Stacker"​. ​ Click OK, exit, and re-launch.
  
-===== Macintosh OS X, the downloaded bundle runs once but not again ===== 
- 
-This extraordinarily puzzling problem, reported on four systems to date, has the symptom that a downloaded bundle runs fine once, but on subsequent launches it aborts immediately with "The application ZereneStacker quit unexpectedly"​ even though there is no problem with memory allocation. 
- 
-The root cause of this problem turns out to be that the Mac operating system has somehow modified or replaced a JavaApplicationStub that is provided with the bundle. ​ The modification/​replacement happens on first execution, which is why Zerene Stacker works once but not after that.  
- 
-In the long term, we will change the Zerene Stacker bundle to use a different first-execution procedure to avoid this problem. 
- 
-But as a short-term workaround, it has proved adequate to replace the JavaApplicationStub in Zerene Stacker with one that should already be found on your system. Here is the procedure: 
- 
-The file to be replaced is at 
-ZereneStacker.app/​Contents/​MacOS/​JavaApplicationStub .  To reach into this 
-directory, simply right-click (or ctrl-click) on the ZereneStacker icon, 
-then select Show Package Contents. ​ Navigate to Contents/​MacOS,​ and you 
-will see the file JavaApplicationStub. 
- 
-The JavaApplicationStub that you need to use instead can be accessed using 
-Finder. ​ Open a Finder window and go to 
-<​bootdisk>/​System/​Library/​Frameworks/​JavaVM.framework/​Resources/​MacOS,​ 
-where <​bootdisk>​ is just the name of the disk that you boot from.  There 
-you will see one or two files, JavaApplicationStub and possibly 
-JavaApplicationStub64. 
- 
-Right-click on the JavaApplicationStub in the ...Frameworks... tree, and 
-select Copy "​JavaApplicationStub"​. 
- 
-Then go into Contents/​MacOS of the ZereneStacker package, right-click on 
-any blank space, and select Paste Item.  You should receive a warning that 
-"​JavaApplicationStub"​ already exists. ​ Go ahead and allow the replacement,​ 
-after looking one more time to be sure that you really are inside the 
-ZereneStacker package and **not** still in Frameworks. ​ 
  
 ===== Macintosh OS X, accessing external drives may be awkward ===== ===== Macintosh OS X, accessing external drives may be awkward =====
  
-**Note:** In all recent versionsyou can drag-and-drop directly onto the input files list.  There is no need to File > Add Files to  open a filechooser as described below. ​ Just open a separate ​Finder window, select your image files there, then use drag-and-drop to enter them directly into Zerene Stacker'​s "Input Files" panel, at the place where it says "​(Drop ​files or folders here to begin)"​.  +On MacsZerene Stacker normally attempts ​to open a Finder window ​to use as a helper service for navigating ​and selecting ​files. ​ On a few Macsfor unknown reasonsthe Finder ​window refuses ​to open.  ​In that case, Zerene Stacker ​automatically switches to a different methodusing a facility named "​JFileChooser"​ that is part of the Java Runtime Environment that Zerene Stacker ​runs on top of.  ​(The use of JFileChooser can also be selected explicitly, by removing ​the checkmark at Options > Preferences > Look & Feel > "Use system native File Choosers if possible"​.)
- +
-Further explanation and other approaches follow. +
- +
-The Java filechooser currently used by Zerene Stacker does not display alternate volumes like the native Mac filechooser does.  ​External drives can still be accessed, but the procedure is somewhat awkward. +
- +
-On OS X 10.5 (Leopard) and later, the easiest approach is to open filechooser dialog box in Zerene Stackerusing File > Add Files. ​ Then separatelyuse Finder to open the external drive or network share, go to the appropriate directory, and select the files of interest.  ​Drag and drop those files onto the Add Files dialog of Zerene Stacker, ​then click the Add button in the Zerene Stacker ​dialog.  ​This method ​also has the advantage of showing you a thumbnail preview of the files to be added.+
  
-Alternatively (and required for OS X 10.4), you can go to the bar at the top of the windowthe one where the current directory is shown. ​ Click once on that bar and it will expand into a pull-down list of enclosing directories. ​ At the bottom of the list will be an entry like "​Macintosh HD", representing the main file system of the computer. ​ Click that.  Scroll ​to the bottom of the list and double-click on Volumes. ​ That should give you a list of all your currently mounted media. ​ Double-click on any external drive to open that, then navigate as usual.+Unfortunately ​the JFileChooser interface looks much different from Finder, and it requires more mouseclicks ​to access drives other than the default.
  
-The latter approach ​is required ​on OS X 10.4 because drag-and-drop into the Zerene Stacker filechooser does not work on that system.+To access alternate drives using JFileChooser,​ proceed as follows: 
 +  - Open a JFileChooser window, for example by File > Add File(s) or File > Save Output Image(s). 
 +  - Go to the bar at the top of the window, the one where the current folder ​is shown. ​ Click on that bar and it will expand into a pull-down list of enclosing folders  
 +  ​At the top or bottom of the list will be an entry like "/"​ or "​Macintosh HD", representing the main file system of the computer. ​ Click that to open it.   
 +  ​Scroll to the bottom of the list and double-click ​on Volumes. ​ That should open to give you a list of all your currently mounted media. ​  
 +  - Double-click on any external drive to open that, then navigate as usual.
  
 +Also, note that when using JFileChooser,​ you __must__ use double-click,​ not the Open button, to go inside a folder. ​ For further explanation about this issue, see [[https://​zerenesystems.com/​cms/​stacker/​support/​knownissues#​must_use_double-click_not_the_open_button_to_navigate_into_a_folder_when_using_file_open_project|"​Must use double-click,​ not the Open button, to navigate into a folder when using File > Open Project"​]].
 ===== Macintosh OS X, launch fails due to Courier font problems ===== ===== Macintosh OS X, launch fails due to Courier font problems =====
  
Line 392: Line 383:
  
 In a few remaining cases, it is necessary to manually edit the "​zerenstk.cfg"​ configuration file so as to delete the line that begins with "​RetouchingBrush.Width="​. ​ This file is located in the ZereneStacker folder as described ​ **[[:​stacker:​docs:​faqlist#​i_need_to_report_a_problem_are_there_log_files_i_can_send_you|HERE in the FAQ]]**. ​ This file can be edited with any plain text editor, such as Notepad on Windows or TextEdit on Macs.  The offending line probably says something like "​RetouchingBrush.Width=Infinity"​. Get rid of that line entirely. ​ Edit the file while Zerene Stacker is not running, and then Zerene Stacker should behave normally when launched again. In a few remaining cases, it is necessary to manually edit the "​zerenstk.cfg"​ configuration file so as to delete the line that begins with "​RetouchingBrush.Width="​. ​ This file is located in the ZereneStacker folder as described ​ **[[:​stacker:​docs:​faqlist#​i_need_to_report_a_problem_are_there_log_files_i_can_send_you|HERE in the FAQ]]**. ​ This file can be edited with any plain text editor, such as Notepad on Windows or TextEdit on Macs.  The offending line probably says something like "​RetouchingBrush.Width=Infinity"​. Get rid of that line entirely. ​ Edit the file while Zerene Stacker is not running, and then Zerene Stacker should behave normally when launched again.
 +
 +===== External TIFF reader cannot handle commas in file or directory names =====
 +
 +(This problem is fixed in Build T201303132055 and later.)
 +
 +The external TIFF reader erroneously truncates the file name or path at the first comma. ​ This error results in a generic "Uh-oh -- something went wrong" popup, with diagnostic details in the console log that go something like this:
 +
 +            Trying to read /​Users/​zstest/​ImageFiles/​stuff,​ etc./​TIFF/​IMG_2575.tif
 +            ...
 +            From external converter error stream: TIFFOpen: /​Users/​zstest/​ImageFiles/​stuff:​ Cannot open.
 +            com.zerenesystems.stacker.a.o:​ Tried but failed to read /​Users/​zstest/​ImageFiles/​stuff,​ etc./​TIFF/​IMG_2575.tif using external converter.
 +
 +Notice the truncation of "​ImageFiles/​stuff,​ etc./​TIFF/​IMG_2575.tif"​ to be just "​ImageFiles/​stuff"​ in the error message.
 +
 +There are two different ways to avoid this problem:
 +
 +1. Rename the files or folders to remove the commas, or
 +
 +2. Go to Options > Preferences > Preprocessing and remove the checkmark on "Use External TIFF Reader"​. ​ This will cause Zerene Stacker to use its internal TIFF reader, which is a completely different piece of software that handles commas correctly.
 +
 +===== Macintosh OS X, the downloaded bundle runs once but not again =====
 +
 +This extraordinarily puzzling problem, reported on four systems to date, has the symptom that a downloaded bundle runs fine once, but on subsequent launches it aborts immediately with "The application ZereneStacker quit unexpectedly"​ even though there is no problem with memory allocation.
 +
 +The root cause of this problem turns out to be that the Mac operating system has somehow modified or replaced a JavaApplicationStub that is provided with the bundle. ​ The modification/​replacement happens on first execution, which is why Zerene Stacker works once but not after that. 
 +
 +As of Build T201410311610 (October 31, 2017), Zerene Stacker has used a different launch procedure that avoids this problem.
 +
 +The earlier short-term solution was to replace the JavaApplicationStub in Zerene Stacker with one that should already be found on your system. Here is that procedure:
 +
 +The file to be replaced is at
 +ZereneStacker.app/​Contents/​MacOS/​JavaApplicationStub .  To reach into this
 +directory, simply right-click (or ctrl-click) on the ZereneStacker icon,
 +then select Show Package Contents. ​ Navigate to Contents/​MacOS,​ and you
 +will see the file JavaApplicationStub.
 +
 +The JavaApplicationStub that you need to use instead can be accessed using
 +Finder. ​ Open a Finder window and go to
 +<​bootdisk>/​System/​Library/​Frameworks/​JavaVM.framework/​Resources/​MacOS,​
 +where <​bootdisk>​ is just the name of the disk that you boot from.  There
 +you will see one or two files, JavaApplicationStub and possibly
 +JavaApplicationStub64.
 +
 +Right-click on the JavaApplicationStub in the ...Frameworks... tree, and
 +select Copy "​JavaApplicationStub"​.
 +
 +Then go into Contents/​MacOS of the ZereneStacker package, right-click on
 +any blank space, and select Paste Item.  You should receive a warning that
 +"​JavaApplicationStub"​ already exists. ​ Go ahead and allow the replacement,​
 +after looking one more time to be sure that you really are inside the
 +ZereneStacker package and **not** still in Frameworks. ​
 +
 +===== Using Capture One raw converter, must turn off option to "Embed Camera Profile"​ =====
 +
 +When using the Capture One™ raw converter from Phase One, sometimes a red "​Uh-oh"​ popup error will occur, with a detailed diagnostic that says this:
 +
 +        java.awt.color.CMMException:​ LCMS error 13: couldn'​t link the profiles
 +
 +To solve this problem, go into Capture One and change its settings so as to select a color profile other than "Embed Camera Profile",​ before generating TIFF or JPEG files to be loaded into Zerene Stacker. ​ The "Embed Camera Profile"​ option apparently causes Capture One to produce an output file that contains multiple color profiles, linked together in some way that cannot be handled by the image I/O libraries used inside Zerene Stacker. ​ With "Embed Camera Profile"​ not selected, Capture One will include only the image'​s own color profile, which is fully supported by Zerene Stacker.
 +
 +This problem is believed solved in Build T201610272136 and later.
  
  
  
stacker/support/knownissues.txt · Last modified: 2023/09/08 15:11 by rjlittlefield
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