Zerene Stacker

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stacker:support:knownissues [2026/03/09 05:56]
rjlittlefield [Using Capture One raw converter, must turn off option to "Embed Camera Profile"]
stacker:support:knownissues [2026/05/19 17:38] (current)
rjlittlefield
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 Here is an index to the known issues: Here is an index to the known issues:
  
-    * [[#​macos_big_sur_system_preference_for_prefer_tabs_can_hang_zerene_stacker|macOS Big Sur, System Preference for "​Prefer tabs" can hang Zerene Stacker.]] 
     * [[#​license_keys_that_contain_accented_or_non-english_characters_may_get_corrupted_in_email_transmission|License keys that contain accented or non-English characters may get corrupted in email transmission.]]     * [[#​license_keys_that_contain_accented_or_non-english_characters_may_get_corrupted_in_email_transmission|License keys that contain accented or non-English characters may get corrupted in email transmission.]]
     * [[#​settings_are_retained_across_uninstallreinstall|Settings are retained across uninstall/​reinstall.]]     * [[#​settings_are_retained_across_uninstallreinstall|Settings are retained across uninstall/​reinstall.]]
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     * [[#​macintosh_os_x_could_not_establish_communications_with_stackshot_controller|Macintosh OS X, "Could not establish communications with StackShot controller"​.]]     * [[#​macintosh_os_x_could_not_establish_communications_with_stackshot_controller|Macintosh OS X, "Could not establish communications with StackShot controller"​.]]
     * [[#​macintosh_os_x_zerene_stacker_will_work_on_only_one_stack_at_a_time|Macintosh OS X, Zerene Stacker will work on only one stack at a time.]]     * [[#​macintosh_os_x_zerene_stacker_will_work_on_only_one_stack_at_a_time|Macintosh OS X, Zerene Stacker will work on only one stack at a time.]]
-    * [[#​macintosh_os_x_mountain_lion_reports_installation_bundle_is_damaged_move_to_trash|Macintosh OS X (Mountain Lion) reports installation bundle is "​damaged,​ move to trash"​.]] 
     * [[#​macintosh_os_x_how_to_recover_from_excessive_memory_allocation|Macintosh OS X, how to recover from excessive memory allocation.]]     * [[#​macintosh_os_x_how_to_recover_from_excessive_memory_allocation|Macintosh OS X, how to recover from excessive memory allocation.]]
     * [[#​macintosh_os_x_tiff_files_may_be_very_slow_to_read|Macintosh OS X, TIFF files may be very slow to read.]]     * [[#​macintosh_os_x_tiff_files_may_be_very_slow_to_read|Macintosh OS X, TIFF files may be very slow to read.]]
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     * [[#​macintosh_os_x_the_downloaded_bundle_runs_once_but_not_again|Macintosh OS X, the downloaded bundle runs once but not again.]]     * [[#​macintosh_os_x_the_downloaded_bundle_runs_once_but_not_again|Macintosh OS X, the downloaded bundle runs once but not again.]]
     * [[#​using_capture_one_raw_converter_must_turn_off_option_to_embed_camera_profile|Using Capture One raw converter, must turn off option to "Embed Camera Profile"​.]]     * [[#​using_capture_one_raw_converter_must_turn_off_option_to_embed_camera_profile|Using Capture One raw converter, must turn off option to "Embed Camera Profile"​.]]
- +    * [[#​macintosh_os_x_mountain_lion_reports_installation_bundle_is_damaged_move_to_trash|Macintosh OS X (Mountain Lionreports installation bundle ​is "damaged, move to trash".]] 
-===== macOS Big Sur, system preference for "​Prefer tabs" can hang Zerene Stacker ===== +    * [[#​macos_big_sur_system_preference_for_prefer_tabs_can_hang_zerene_stacker|macOS Big Sur, System Preference ​for "​Prefer tabs" ​can hang Zerene Stacker.]]
- +
-Beginning with macOS "Big Sur" ​(macOS 11, also known as 10.16**it is critical that System Preferences > General > "Prefer tabs: ... when opening documents"​ must be set to either ​"never" or "in full screen"​** ​Further,​ if you select "in full screen",​ then do not run Zerene in full screen mode.  ​ +
- +
-These restrictions are because there is a new bug, introduced in macOS Big Sur, that causes Zerene Stacker (and all other Java programs) to display a grossly oversized window and become nonresponsive,​ whenever the application tries to open a non-blocking dialog. ​ In Zerene Stacker, such dialogs include the DMap contrast threshold slider, the StackShot controller panel, and the DOF and stereo calculators. ​  +
- +
-The safest setting ​for "​Prefer tabs" ​is "​never"​. ​ The most dangerous setting is "​always",​ which as of this writing (Feb 2021) will cause Zerene Stacker to hang if it tries to open any of the dialogs listed earlier. +
- +
-When Zerene Stacker is hung because of this problem, you may not be able to get a Force Quit menu by mouse action. ​ However, the keyboard combination Cmd-Option-Escape will still work to bring up a Force Quit menu, in which you can select ​Zerene Stacker ​and then Force Quit it.+
  
  
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 {{:​stacker:​support:​knownissues:​zerenestackerfolder.png}} {{:​stacker:​support:​knownissues:​zerenestackerfolder.png}}
  
-On Windows 10, usually it is not possible to open the Start > Run dialog. ​ Instead, you can open a File Explorer window, then in that window'​s address bar, type in %APPDATA% and hit the Enter key. On some systems, it is also necessary to set the folder view options to "Show hidden files, folders, and drives"​. ​ See for example [[http://www.windows10themes.net/guides/how-to-view-the-appdata-folder-in-windows-10/]]+On Windows 10, usually it is not possible to open the Start > Run dialog. ​ Instead, you can open a File Explorer window, then in that window'​s address bar, type in %APPDATA% and hit the Enter key. On some systems, it is also necessary to set the folder view options to "Show hidden files, folders, and drives"​. ​ See for example [[https://www.lifewire.com/find-and-use-the-appdata-folder-in-windows-4771752]]
  
 On **Macintosh OS X**, dragging the application bundle to the trash leaves behind some state information in other files and folders, so that reinstalling the program will not restore the program to a factory-fresh condition. ​ To get back to a factory-fresh condition, you must manually remove one folder and the files it contains, before reinstalling. ​ The folder you need to remove is ~/​Library/​Preferences/​ZereneStacker,​ where ~ denotes your account'​s home directory. ​ Note that the ~/Library folder is normally hidden. ​ To open it, hold down your keyboard'​s Option (Alt) key while selecting Go > Library in a Finder window. ​ Once you have the ~/Library folder, then find and go into the Preferences folder. ​ From there, the ZereneStacker folder will be at the bottom of the list, or very close to it.  Be careful that you do not remove other folders or files in ~/​Library/​Preferences,​ because these contain settings for other programs.  ​ On **Macintosh OS X**, dragging the application bundle to the trash leaves behind some state information in other files and folders, so that reinstalling the program will not restore the program to a factory-fresh condition. ​ To get back to a factory-fresh condition, you must manually remove one folder and the files it contains, before reinstalling. ​ The folder you need to remove is ~/​Library/​Preferences/​ZereneStacker,​ where ~ denotes your account'​s home directory. ​ Note that the ~/Library folder is normally hidden. ​ To open it, hold down your keyboard'​s Option (Alt) key while selecting Go > Library in a Finder window. ​ Once you have the ~/Library folder, then find and go into the Preferences folder. ​ From there, the ZereneStacker folder will be at the bottom of the list, or very close to it.  Be careful that you do not remove other folders or files in ~/​Library/​Preferences,​ because these contain settings for other programs.  ​
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 The explanation here is that by design, Zerene Stacker is programmed using the "​single document"​ model. ​ This means that each instance of Zerene Stacker can only work with one stack at a time.  The normal process of launching Zerene Stacker by clicking its icon will not launch a second instance. ​ Instead, clicking the icon just makes the current instance foreground, apparently in the expectation that all programs are multi-document. ​ Unfortunately there seems to be no way to just tell MacOS that Zerene Stacker is single document and it should launch another instance when the launch icon is clicked. ​ The "​-n"​ argument on the open command says to create a new instance regardless of whether there'​s already one running. ​ The explanation here is that by design, Zerene Stacker is programmed using the "​single document"​ model. ​ This means that each instance of Zerene Stacker can only work with one stack at a time.  The normal process of launching Zerene Stacker by clicking its icon will not launch a second instance. ​ Instead, clicking the icon just makes the current instance foreground, apparently in the expectation that all programs are multi-document. ​ Unfortunately there seems to be no way to just tell MacOS that Zerene Stacker is single document and it should launch another instance when the launch icon is clicked. ​ The "​-n"​ argument on the open command says to create a new instance regardless of whether there'​s already one running. ​
- 
-===== Macintosh OS X (Mountain Lion) reports installation bundle is "​damaged,​ move to trash" ===== 
- 
-Note: All recent versions of Zerene Stacker are digitally signed in such a way as to avoid this problem. ​ However, we're leaving this description in place in case a similar problem resurfaces at some point. ​ Please let us know if you encounter one.) 
- 
-The symptom here is that when Mountain Lion finishes downloading a Zerene Stacker application bundle such as ZS-MacOSX-T201207281315.zip,​ it reports that the file is "​damaged"​ and that you have to "move it to the trash"​. 
- 
-In fact, the file is not damaged and it will run fine under Mountain Lion if the download security settings are temporarily changed to "​Anywhere"​. ​ Detailed instructions to accomplish this (for a different product) are provided at [[http://​wiki.espeakers.com/​index.php/​OS_X_Mountain_Lion_installation_instructions]]. 
- 
-What has happened is that Apple has changed their malware detection to err on the side of caution and report "​damaged"​ unless they can confirm via digital signature that the file is __not__ damaged.  ​ 
- 
-Zerene Stacker distributions prior to ZS-MacOSX-SA-T201207281315.zip were not digitally signed, so they will always trigger the "​damaged"​ message on Mountain Lion or other systems with the same security settings.  ​ 
- 
-Starting with ZS-MacOSX-SA-T201207281315.zip,​ the distributions are digitally signed and will install without complaint on almost all systems. ​ We have heard of one Mountain Lion installation where even the signed distribution encountered the "​damaged"​ message and it was necessary to use the workaround of temporarily changing the download security settings. 
- 
-If you need more information about this issue, please contact [[support@zerenesystems.com]] . 
  
 ===== Macintosh OS X, how to recover from excessive memory allocation ===== ===== Macintosh OS X, how to recover from excessive memory allocation =====
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 This problem is believed solved in Build T201610272136 (October 2016) and later. This problem is believed solved in Build T201610272136 (October 2016) and later.
 +
 +===== Macintosh OS X (Mountain Lion) reports installation bundle is "​damaged,​ move to trash" =====
 +
 +Note: All recent versions of Zerene Stacker are digitally signed in such a way as to avoid this problem. ​ However, we're leaving this description in place in case a similar problem resurfaces at some point. ​ Please let us know if you encounter one.)
 +
 +The symptom here is that when Mountain Lion finishes downloading a Zerene Stacker application bundle such as ZS-MacOSX-T201207281315.zip,​ it reports that the file is "​damaged"​ and that you have to "move it to the trash"​.
 +
 +In fact, the file is not damaged and it will run fine under Mountain Lion if the download security settings are temporarily changed to "​Anywhere"​.
 +
 +What has happened is that Apple has changed their malware detection to err on the side of caution and report "​damaged"​ unless they can confirm via digital signature that the file is __not__ damaged.  ​
 +
 +Zerene Stacker distributions prior to ZS-MacOSX-SA-T201207281315.zip were not digitally signed, so they will always trigger the "​damaged"​ message on Mountain Lion or other systems with the same security settings.  ​
 +
 +Starting with ZS-MacOSX-SA-T201207281315.zip,​ the distributions are digitally signed and will install without complaint on almost all systems. ​ We have heard of one Mountain Lion installation where even the signed distribution encountered the "​damaged"​ message and it was necessary to use the workaround of temporarily changing the download security settings.
 +
 +If you need more information about this issue, please contact [[support@zerenesystems.com]] .
 +
 +===== macOS Big Sur, system preference for "​Prefer tabs" can hang Zerene Stacker =====
 +
 +Beginning with macOS "Big Sur" (macOS 11, also known as 10.16) **it is critical that System Preferences > General > "​Prefer tabs: ... when opening documents"​ must be set to either "​never"​ or "in full screen"​**. ​ Further, if you select "in full screen",​ then do not run Zerene in full screen mode.  ​
 +
 +These restrictions are because there is a new bug, introduced in macOS Big Sur, that causes Zerene Stacker (and all other Java programs) to display a grossly oversized window and become nonresponsive,​ whenever the application tries to open a non-blocking dialog. ​ In Zerene Stacker, such dialogs include the DMap contrast threshold slider, the StackShot controller panel, and the DOF and stereo calculators.  ​
 +
 +The safest setting for "​Prefer tabs" is "​never"​. ​ The most dangerous setting is "​always",​ which as of this writing (Feb 2021) will cause Zerene Stacker to hang if it tries to open any of the dialogs listed earlier.
 +
 +When Zerene Stacker is hung because of this problem, you may not be able to get a Force Quit menu by mouse action. ​ However, the keyboard combination Cmd-Option-Escape will still work to bring up a Force Quit menu, in which you can select Zerene Stacker and then Force Quit it.
 +
  
  
  
stacker/support/knownissues.txt · Last modified: 2026/05/19 17:38 by rjlittlefield
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